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simon-anders / htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
https://htseq.readthedocs.io/en/release_0.11.1/
GNU General Public License v3.0
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Trouble installing HTSeq (python 3.5) on Mac #60

Closed Suzanne11 closed 6 years ago

Suzanne11 commented 6 years ago

Hello,

I am new with python , and trying to install HTSeq on my Mac. Before I started I have installed xcode and numpy: 1.14.5.

I figured I first need to install pysam, the step I am stuck right now.

pip install pysam

Command "/Users/suzanne/env/bin/python3 -u -c "import setuptools, tokenize;file='/private/var/folders/yp/vd8kgzyj00x4b5dzcq4_vghh0000gn/T/pip-install-b8sgc50v/pysam/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /private/var/folders/yp/vd8kgzyj00x4b5dzcq4_vghh0000gn/T/pip-record-u3cbv062/install-record.txt --single-version-externally-managed --compile --install-headers /Users/suzanne/env/include/site/python3.7/pysam" failed with error code 1 in /private/var/folders/yp/vd8kgzyj00x4b5dzcq4_vghh0000gn/T/pip-install-b8sgc50v/pysam/

pip install HTSeq

Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/yp/vd8kgzyj00x4b5dzcq4_vghh0000gn/T/pip-install-eirjc94y/HTSeq/

Can someone help me out?

Thanks in advance!

iosonofabio commented 6 years ago

HTSeq on OSX is only tested for Python 2.7 and 3.6, please update your Python.