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simon-anders / htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
https://htseq.readthedocs.io/en/release_0.11.1/
GNU General Public License v3.0
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error in ver 0.11 and UMI consideration #68

Closed Tarela closed 4 years ago

Tarela commented 6 years ago

Hi there,

I've been using HTseq for quite a long time and was a big fan of it!

Recently I've updated HTseq to ver0.11 and got a error saying that "ImportError: No module named _StepVector", which I've never observed in the previous versions of HTseq. Could you please help us to solve that problem? My OS is Linux, CentOS 7.3.

BTW, does HTseq take care of the UMI information (unique molecular identifier, referring to single cell RNA-seq analysis)? If so, could you please give some comments on how to set options?

Thanks in advance! Best Shawn

simon-anders commented 6 years ago

_StepVector is a part of HTSeq. So, your installation is incomplete, or some paths are wrong.

As for UMIs: I'm actually working on this right now, and I have just got a first, very simple, prototype working last night.

Tarela commented 6 years ago

Great, Thanks for your quick reply and looking forward to your new version!

Best Shawn

On Nov 22, 2018, at 4:25 AM, Simon Anders notifications@github.com wrote:

_StepVector is a part of HTSeq. So, your installation is incomplete, or some paths are wrong.

As for UMIs: I'm actually working on this right now, and I have just got a first, very simple, prototype working last night.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/simon-anders/htseq/issues/68#issuecomment-440966044, or mute the thread https://github.com/notifications/unsubscribe-auth/AD0IACZXMWM7c3Zu0bZ0nsSsZ3mK3O0hks5uxm1_gaJpZM4Yu2YL.

iosonofabio commented 4 years ago

No activity in more than a year, closing. We should add UMI though, interested in seeing it done.