Some of the chromosomes had multiple results

simon19891216 / CentIER

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Some of the chromosomes had multiple results #15

Open jwli-code opened 2 months ago

jwli-code commented 2 months ago

Some chromosomes have multiple intervals what's the problem, how do you choose them, is there a confidence score.

ChrB01  13133334        16966667
ChrB02  48940000        53939999
ChrB03  33410000        36909999
ChrB03  49100000        54099999
ChrB04  10800001        14800000
ChrB04  21600001        26100000
ChrB05  50280000        52279999
ChrB06  13163333        17496666
ChrB07  40200001        42200000
ChrB08  31500001        33000000
ChrC01  10133334        14466667
ChrC02  45290000        49789999
ChrC03  41363333        45696666
ChrC04  29480000        30979999
ChrC05  32300001        35300000
ChrC06  68200001        69700000
ChrC07  11000001        13000000
ChrC08  16163333        19996666
ChrC09  24930000        29429999

simon19891216 commented 2 months ago

please provide the command you used

At 2024-08-26 17:36:23, "jwli" @.***> wrote:

Some chromosomes have multiple intervals what's the problem, how do you choose them, is there a confidence score.

ChrB01 13133334 16966667 ChrB02 48940000 53939999 ChrB03 33410000 36909999 ChrB03 49100000 54099999 ChrB04 10800001 14800000 ChrB04 21600001 26100000 ChrB05 50280000 52279999 ChrB06 13163333 17496666 ChrB07 40200001 42200000 ChrB08 31500001 33000000 ChrC01 10133334 14466667 ChrC02 45290000 49789999 ChrC03 41363333 45696666 ChrC04 29480000 30979999 ChrC05 32300001 35300000 ChrC06 68200001 69700000 ChrC07 11000001 13000000 ChrC08 16163333 19996666 ChrC09 24930000 29429999

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jwli-code commented 2 months ago

python CentIERv3.0.py -g ${i}.chr.chrplus.genome.fasta

simon19891216 commented 2 months ago

ok, I will check the source code

在 2024-08-26 20:56:44，"jwli" @.***> 写道：

python CentIERv3.0.py -g ${i}.chr.chrplus.genome.fasta

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simon19891216 commented 2 months ago

I need more information to confirm the final range. Would it be convenient for you to contact me via email? I need to review the genome sequence you are using.

在 2024-08-26 20:56:44，"jwli" @.***> 写道：

python CentIERv3.0.py -g ${i}.chr.chrplus.genome.fasta

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jwli-code commented 2 months ago

I have sent the file to xudongzhuanyong@163.com