search

simon19891216 / GFAP

a software for annotating plant genes
19 stars 4 forks source link

GFAP fails silently #2

Closed katieemelianova closed 4 months ago

katieemelianova commented 4 months ago

Hi there,

I'm attempting to run GFAP using a few sequences at first, and all things that I attempt fail silently: e.g:

python3 GFAP.py -go -qn test.fasta -o test_out

I first needed to install a few python packages before it ran, but once I installed them there are no error messages, regardless of whether I run GFAP.py or GFAP-linux.py. I did not compile anything before I ran it, and I couldn't seem to find any installation instructions, so I assume I have not skipped any steps since cloning the code from gitghub?

Could you please advise what I can do to debug?

Best,

Katie

simon19891216 commented 4 months ago

Thank you for your question. There seems to be an issue with the command you are using. Before using GFAP, you need to download the database.Could you please provide me with your email address so that I can send you the operational instructions?

At 2024-07-11 20:00:47, "katieemelianova" @.***> wrote:

Hi there,

I'm attempting to run GFAP using a few sequences at first, and all things that I attempt fail silently: e.g:

python3 GFAP.py -go -qn test.fasta -o test_out

I first needed to install a few python packages before it ran, but once I installed them there are no error messages, regardless of whether I run GFAP.py or GFAP-linux.py. I did not compile anything before I ran it, and I couldn't seem to find any installation instructions, so I assume I have not skipped any steps since cloning the code from gitghub?

Could you please advise what I can do to debug?

Best,

Katie

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***>

katieemelianova commented 4 months ago

Hi there,

Thanks for your reply, please could you send the documentation to katie_emelianova@hotmail.com

Best,

Katie

katieemelianova commented 4 months ago

Thanks for your online help with this, I have dowloaded the databases now from the FTP link specified in the documentation.

Best,

Katie