ABBABABAwindows.py "TypeError: slidingCoordWindows()"

ljchueca commented 1 year ago

Hi all, I'm encountering an issue while running ABBABABAwindows.py, and I need some assistance in resolving it.

I'm running the following command (python 3.7.4):

   ABBABABAwindows.py -w 30000 -m 30 -s 30000 -g ${FILE}.geno.gz \
      -o ${FILE}.fd.Crug.CuSWA.Ccon.Ccav.csv.gz \
      -f phased --minData 0.5 --writeFailedWindow \
      -P1 Crug -P2 CuSWA -P3 Ccon -O Ccav \
      --popsFile Candidula_species_pop -T 60

The script is expected to run without any errors, but it returns the following error message:

6264 scaffolds will be analyzed. Traceback (most recent call last): File "/ABBABABAwindows.py", line 321, in exclude = scafsToExclude) TypeError: slidingCoordWindows() got an unexpected keyword argument 'headerLine'

I haven't specified any scaffold to exclude. The error seems to be related to the 'headerLine' argument.

I would appreciate any insights, tips, or solutions to this issue.

Thank you in advance for your help.

simonhmartin commented 1 year ago

Hi, this appears to be an issue with the version of genomics.py you have. Try re-downloading the entire repository. Simon

ljchueca commented 1 year ago

Hi, this appears to be an issue with the version of genomics.py you have. Try re-downloading the entire repository. Simon

I did it and It worked correctly. Many thanks, Luis

simonhmartin / genomics_general

ABBABABAwindows.py "TypeError: slidingCoordWindows()" #105