Order of `type` columns

simonrharris / SKA

Split Kmer Analysis

MIT License

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Closed tseemann closed 5 years ago

tseemann commented 5 years ago

Currently Sample adk atpA ddl gdh gyd pstS purK ST

Any chance making it compatible with mlst? Sample ST adk atpA ddl gdh gyd pstS purK

This has the advantage that no matter how many alleles in the scheme, the ST will be consistent.

But I understand that ST is not compulsory, and that this could be used for assaying all sorts of amplicons such as AMR genes.

simonrharris commented 5 years ago

I can do that. TBH the order I chose was a little arbitrary.

simonrharris commented 5 years ago

The order has been changed in commit 56babcbfe0cc83ed83bd9bb8e2ef927ef08d6632