Closed foamy1881 closed 4 years ago
Anyone have any looping command i.e. like python script to perform the task from raw fastq folder? I have like hundreds of isolates..
I find GNU parallel is good for that, even if you do one at a time.
parallel "ska something -out {}.output {}/R1.fq.gz {}/R2.fq.gz" < file_of_Ids.txt
Anyone have any looping command i.e. like python script to perform the task from raw fastq folder? I have like hundreds of isolates..