simonrharris / SKA

Split Kmer Analysis
MIT License
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SKA Type crashes when no allele is found for a locus #29

Open jrober84 opened 4 years ago

jrober84 commented 4 years ago

If a sample is missing any of the supplied loci to SKA type it says that there is a mismatch in the number between your alleles and profile. It would be really useful if SKA type could tolerate a missing locus and provide a hyphen in its place since for some schemes the locus could be genuinely missing in some lineages. Most of the time it would be the result of poor quality sequence data but it would be really useful to have the program identify the locus as missing instead of erroring out.