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simroux / Inovirus

Set of scripts and data used to detect putative inovirus sequences and/or taxonomically classify them.
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bioconda installation do not work #4

Open gucedac opened 2 years ago

gucedac commented 2 years ago

Hi. I am trying to install inovirus_detector using bioconda by I just got this ... ` $conda create -n inovirus_detector -c bioconda perl-bioperl=1.7.2 blast=2.7.1 hmmer=3.2.1

Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment:/ ` I waited for a long time to Solving environment: but nothing happens

Someone can help me?

simroux commented 2 years ago

Unfortunately, this is a (common) conda issue, and nothing specific to this tool. There are some suggestions online, e.g. https://stackoverflow.com/questions/63734508/stuck-at-solving-environment-on-anaconda , but no universal fix (that I know of).

One possible solution may be to use mamba instead of conda, but this has not been tested for Inovirus detector.

gucedac commented 2 years ago

Unfortunately, this is a (common) conda issue, and nothing specific to this tool. There are some suggestions online, e.g. https://stackoverflow.com/questions/63734508/stuck-at-solving-environment-on-anaconda , but no universal fix (that I know of).

One possible solution may be to use mamba instead of conda, but this has not been tested for Inovirus detector.

I used mamba and worked it!! Thanks