Closed jolespin closed 6 years ago
If not through Cyverse, the easiest way to download the database is probably via using the Docker version of VirSorter (https://github.com/simroux/VirSorter#docker---from-dockerhub). Otherwise, if neither of these solutions are working, you can also grab the tar.gz from google drive: https://drive.google.com/file/d/0B6Tg-jjiojemNF9vMEFfYkl5S2s/view?usp=sharing.
Best,
Simon
That Google Drive link is exactly what I was looking for! Thank you! Looking forward to using your tool. I have this weird draft genome bin that looks viral from some of the annotations.
Sounds good, let me know if you have any issue or any question (always looking out for weird new viruses :-) )
Quick question, when running:
Where are the virsorter-run files? I got docker install and want to deploy the image. Thanks!
docker run -v /Applications/VirSorter/virsorter-data:/data -v /host/path/to/virsorter-run:/wdir -w /wdir --rm discoenv/virsorter:v1.0.3 --db 2 --fna /wdir/Input_contigs.fna
I did not manage the docker part so not 100% sure, but my feeling was that you don't have to put any file in host/path/to/virsorter-run, this is just a path to a folder you'll create on your machine (that you can change however you want) for VirSorter to work in.
If not through Cyverse, the easiest way to download the database is probably via using the Docker version of VirSorter (https://github.com/simroux/VirSorter#docker---from-dockerhub). Otherwise, if neither of these solutions are working, you can also grab the tar.gz from google drive: https://drive.google.com/file/d/0B6Tg-jjiojemNF9vMEFfYkl5S2s/view?usp=sharing.
Best,
Simon
If not through Cyverse, the easiest way to download the database is probably via using the Docker version of VirSorter (https://github.com/simroux/VirSorter#docker---from-dockerhub). Otherwise, if neither of these solutions are working, you can also grab the tar.gz from google drive: https://drive.google.com/file/d/0B6Tg-jjiojemNF9vMEFfYkl5S2s/view?usp=sharing.
Best,
Simon
The link seems to have expired,could you provide it again ?Thank you.
The database is now available via wget: wget https://zenodo.org/record/1168727/files/virsorter-data-v2.tar.gz
Hi Simon,
Have you updated the database? How many PCs are included in the database now?
Many thanks, Jiqiu
No update of the database recently, mostly because we have been working on VirSorter 2 :-) https://github.com/jiarong/VirSorter2
No update of the database recently, mostly because we have been working on VirSorter 2 :-) https://github.com/jiarong/VirSorter2
WOOOW! COOL! But if we use this tool, how to cite it?
Many thanks, Jiqiu
The paper should be on bioRxiv relatively soon, but in the meantime you can provide the link to the github repo.
The link to the download instructions brought me back to this for a full circle. Is there any way I can just use
wget
instead of installing software to download the data? Do you guys have the 4 GB dataset on Google Drive or any FTP site?