When running the wrapper after a failed execution it will stop with this error:
Step 1 failed, we stop there at /home/ubuntu/miniconda3/envs/virsorter/bin/wrapper_phage_contigs_sorter_iPlant.pl line 228.
Removing the already created directory fixed it so I think it would benefit the user to check the existence of the output directory and throw a specific error, if the directory is found.
When running the wrapper after a failed execution it will stop with this error:
Step 1 failed, we stop there at /home/ubuntu/miniconda3/envs/virsorter/bin/wrapper_phage_contigs_sorter_iPlant.pl line 228.
Removing the already created directory fixed it so I think it would benefit the user to check the existence of the output directory and throw a specific error, if the directory is found.