Open ZarulHanifah opened 4 years ago
Hi,
This is weird, it seems to be a BioPerl error, but I have never seen it. Could you try to create a new bioperl sequence in a separate script ? This would look something like this:
!/usr/bin/env perl
use strict; use Bio::Seq; my $seq_bio = Bio::Seq->new(id=>"dummyid",-seq =>"ATCGATCGATCGATCGATCGATCGATCGATCGATCGATCG",-alphabet => 'dna' ); my @seqs = Bio::SeqUtils->translate_6frames($seq_bio);
Hello Virsorter developers,
I tried Virsorter sample data with success. However, there is a problem when I add custom phage (--cp). The command was:
Here is a part of the stdout which I think might be relevant to this issue:
Here is the err log file:
I have read an issue mentioning how to use --cp (https://github.com/simroux/VirSorter/issues/43), so the way I used the command should be correct, but it didn't work. Can you please help me with this?
Thank you.