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simroux / VirSorter

Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
GNU General Public License v2.0
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document version to use for external tools #55

Open EricDeveaud opened 4 years ago

EricDeveaud commented 4 years ago

Hello,

while looking at the README there is no references to the (prefered//recomended) version to use for external tools 

Install the following into a "bin" directory:

* HMMER (http://hmmer.janelia.org/) 
* MCL (http://micans.org/mcl/)
* Metagene Annotator (http://metagene.nig.ac.jp/metagene/download_mga.html)
* MUSCLE (http://www.drive5.com/muscle/)
* BLAST+ (ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/)
* DIAMOND (https://github.com/bbuchfink/diamond)

only conda recipe says something about mcl and hmmer version to use if I understand corectly.: mcl=14.137, hmmer=3.1b2

please set explicit version(s) to use

regards

Eric