I face the following error
any idea?
Error in rule remove_partial_gene:
jobid: 123
output: iter-0/pp-circular-flt.gff, iter-0/pp-circular-flt.faa
conda-env: /home/*****/tools/virsorter2_database/conda_envs/da9264f7
shell:
Log=/home/****(*/camel-data/camel-megahit-out/virsorter_out/virsorter2.8kb_out/log/iter-0/step1-pp/circular-remove-partial-gene-common.log
if [ circular = "circular" ]; then
python /home/*****tools/anaconda2/envs/virsorter2/lib/python3.8/site-packages/virsorter/./scripts/circular-remove-partial-gene.py iter-0/pp-circular.gff iter-0/pp-circular-flt.gff &> $Log || { echo "See error detail in $Log" | python /home/*****/tools/anaconda2/envs/virsorter2/lib/python3.8/site-packages/virsorter/./scripts/echo.py --level error; exit 1; }
python /home/*****/tools/anaconda2/envs/virsorter2/lib/python3.8/site-packages/virsorter/./scripts/filter-seqs-by-gff.py iter-0/pp-circular-flt.gff iter-0/pp-circular.faa iter-0/pp-circular-flt.faa
else
(cd iter-0 && ln -s pp-circular.gff pp-circular-flt.gff)
(cd iter-0 && ln -s pp-circular.faa pp-circular-flt.faa)
fi
(one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Exiting because a job execution failed. Look above for error message
An error occurred. Detailed errors may not be printed for certain rules. Refer to the log file of the failed command for troubleshooting
Issues can be raised at: https://github.com/jiarong/VirSorter2/issues
I face the following error any idea? Error in rule remove_partial_gene: jobid: 123 output: iter-0/pp-circular-flt.gff, iter-0/pp-circular-flt.faa conda-env: /home/*****/tools/virsorter2_database/conda_envs/da9264f7 shell:
Exiting because a job execution failed. Look above for error message
An error occurred. Detailed errors may not be printed for certain rules. Refer to the log file of the failed command for troubleshooting Issues can be raised at: https://github.com/jiarong/VirSorter2/issues