Closed 18AS closed 3 years ago
Hi,
For VirSorter 2 errors, please file an issue in the VirSorter 2 github repo: https://github.com/jiarong/VirSorter2
That being said, the error you get seems to be a Conda error, hopefully it was a temporary one on (one of) the conda server, and it may be solved already ?
Best, Simon
I am getting this error report while trying to run virsorter2 after installation, database downloading and configuring. What is the issue?
CreateCondaEnvironmentException: Could not create conda environment from /home/others/bioinfo/anaconda2/envs/VS/lib/python3.6/site-packages/virsorter/rules/../envs/vs2.yaml:
>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
$ /home/others/bioinfo/anaconda2/envs/VS/bin/mamba create --quiet --file /home/others/bioinfo/AGPS/db/conda_envs/999c0136.yaml --prefix /home/others/bioinfo/AGPS/db/conda_envs/999c0136
environment variables: CIO_TEST=
CONDA_AUTO_UPDATE_CONDA=false
CONDA_DEFAULT_ENV=VS
CONDA_EXE=/home/others/bioinfo/anaconda2/bin/conda
CONDA_PREFIX=/home/others/bioinfo/anaconda2/envs/VS
CONDA_PREFIX_1=/home/others/bioinfo/anaconda2
CONDA_PROMPT_MODIFIER=(VS)
CONDA_PYTHON_EXE=/home/others/bioinfo/anaconda2/bin/python
CONDA_ROOT=/home/others/bioinfo/anaconda2/envs/VS
CONDA_SHLVL=2
CURL_CA_BUNDLE=
PATH=/usr/local/qiime191:/usr/local/qiime191/bin:/usr/local/qiime191/lib:/u
sr/local/qiime191/include:/home/others/bioinfo/anaconda2/envs/VS/bin:/
home/others/bioinfo/anaconda2/condabin:/usr/local/bin:/usr/bin:/usr/lo
cal/sbin:/usr/sbin:/home/others/bioinfo/bin
REQUESTS_CA_BUNDLE=
SSL_CERT_FILE=
populated config files : /home/others/bioinfo/.condarc conda version : 4.9.2 conda-build version : not installed python version : 3.6.13.final.0 virtual packages : glibc=2.17=0 unix=0=0 __archspec=1=x86_64 base environment : /home/others/bioinfo/anaconda2/envs/VS (writable) channel URLs : https://conda.anaconda.org/smaegol/linux-64 https://conda.anaconda.org/smaegol/noarch https://conda.anaconda.org/bioconda/linux-64 https://conda.anaconda.org/bioconda/noarch https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch https://conda.anaconda.org/au-eoed/linux-64 https://conda.anaconda.org/au-eoed/noarch https://conda.anaconda.org/biobakery/linux-64 https://conda.anaconda.org/biobakery/noarch package cache : /home/others/bioinfo/anaconda2/envs/VS/pkgs /home/others/bioinfo/.conda/pkgs envs directories : /home/others/bioinfo/anaconda2/envs/VS/envs /home/others/bioinfo/.conda/envs platform : linux-64 user-agent : conda/4.9.2 requests/2.25.1 CPython/3.6.13 Linux/3.10.0-1127.13.1.el7.x86_64 centos/7.9.2009 glibc/2.17 UID:GID : 52086:8001 netrc file : None offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
File "/home/others/bioinfo/anaconda2/envs/VS/lib/python3.6/site-packages/snakemake/deployment/conda.py", line 352, in create