I tried to run the Virsorter2_to_Anvio parser and I got this error. I'm not really sure if I did something wrong or if there's an issue with my Virsorter2 output that would have caused this? The virsorter_collection.txt and virsorter_additional_info.txt are still generated so there's just a problem with the annotations file.
######################## Reading all relevant VirSorter2 data
######################## Printing collection file and additional data file
Traceback (most recent call last):
File "/scratch/u/al59331/VirSorter2_to_Anvio/virsorter_to_anvio.py", line 254, in
nb_genes = info_contigs[split_parent][prophage]['nb_genes']
KeyError: 'nb_genes'
I tried to run the Virsorter2_to_Anvio parser and I got this error. I'm not really sure if I did something wrong or if there's an issue with my Virsorter2 output that would have caused this? The virsorter_collection.txt and virsorter_additional_info.txt are still generated so there's just a problem with the annotations file.
VirSorter2_to_Anvio/virsorter_to_anvio.py -i phageomics/vs2-pass2-combined/ -s splits_basic_info_combined.txt -n all_gene_calls_combined.txt -d /hpc/refdata/virsorter/2.2.3/ -A virsorter_additional_info.txt -C virsorter_collection.txt -F virsorter_annotations.txt######################## Reading all relevant VirSorter2 data ######################## Printing collection file and additional data file Traceback (most recent call last): File "/scratch/u/al59331/VirSorter2_to_Anvio/virsorter_to_anvio.py", line 254, in
nb_genes = info_contigs[split_parent][prophage]['nb_genes']
KeyError: 'nb_genes'