sims-lab / CapCruncher

Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
https://sims-lab.github.io/CapCruncher/
GNU General Public License v3.0
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build(deps): Update snakemake requirement from <=7.30.2 to <=7.32.4 #206

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

Version 7.32.4

Bug fixes

  • always sort report (sub-)categories in lexicographical order
  • also inherit rule proxies if there is no rulename modifier specified in a use rule statement
  • ensure that targetjob is always forced. This fixes a bug causing run-directive rules to not being executed even when enforced via e.g. -R.
Changelog

Sourced from snakemake's changelog.

7.32.4 (2023-08-18)

Bug Fixes

  • always sort report (sub-)categories in lexicographical order
  • also inherit rule proxies if there is no rulename modifier specified in a use rule statement
  • ensure that targetjob is always forced. This fixes a bug causing run-directive rules to not being executed even when enforced via e.g. -R.

7.32.3 (2023-08-07)

Bug Fixes

  • fix bug occuring when using multiple use rule statements in combination with the rules object for referring to output of already defined rules.

7.32.2 (2023-08-07)

Bug Fixes

  • unnecessary set Snakefile in AzBatch executor (#2397) (78e6d6e)

7.32.1 (2023-08-05)

Bug Fixes

  • add missing spaces between lines that get concatenated. (#2268) (7238458)
  • better message about profile usage upon execution (#2391) (cf8aea5)
  • do not overwrite default resources setting in azure batch executor (#2395) (4aef3b9)
  • updating of non-dict config values gives error (#2364) (b33aeec)
  • wrong rule names when nesting module imports (#1817) (65c79a4)

Documentation

  • basics.rst: suggest VS Code instead of deprecated Atom as IDE (#2368) (1357316)

7.32.0 (2023-08-03)

Features

  • add support for Kubernetes service account name spec (#2254) (3370426)

Bug Fixes

... (truncated)

Commits
  • 0998cc5 update changelog
  • 7feaef0 fix: always sort report (sub-)categories in lexicographical order
  • 13519c7 fix: also inherit rule proxies if there is no rulename modifier specified in ...
  • fbed5be fix: ensure that targetjob is always forced. This fixes a bug causing run-dir...
  • b76cfff update changelog
  • 4e31f2d fix: proper reuse of rule proxies when importing several times from the same ...
  • 1c5d154 chore(main): release 7.32.2 (#2399)
  • 78e6d6e fix: unnecessary set Snakefile in AzBatch executor (#2397)
  • 024699d chore(main): release 7.32.1 (#2393)
  • 65c79a4 fix: wrong rule names when nesting module imports (#1817)
  • Additional commits viewable in compare view


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codecov[bot] commented 1 year ago

Codecov Report

Merging #206 (383cf92) into master (cfa34de) will not change coverage. Report is 1 commits behind head on master. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #206   +/-   ##
=======================================
  Coverage   58.21%   58.21%           
=======================================
  Files          36       36           
  Lines        2783     2783           
=======================================
  Hits         1620     1620           
  Misses       1163     1163           

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