chore: merge develop with master

[codecov[bot]]

Codecov Report

Merging #214 (f50a5b9) into master (61c8587) will increase coverage by 0.80%. The diff coverage is 69.17%.

@@            Coverage Diff             @@
##           master     #214      +/-   ##
==========================================
+ Coverage   58.21%   59.01%   +0.80%     
==========================================
  Files          36       37       +1     
  Lines        2783     2972     +189     
==========================================
+ Hits         1620     1754     +134     
- Misses       1163     1218      +55     

Files	Coverage Δ
capcruncher/api/filter.py	79.14% <100.00%> (-7.55%)	:arrow_down:
capcruncher/api/io.py	45.51% <ø> (ø)
capcruncher/api/pileup.py	38.94% <100.00%> (-1.58%)	:arrow_down:
capcruncher/cli/alignments_annotate.py	85.71% <100.00%> (-5.75%)	:arrow_down:
capcruncher/cli/alignments_filter.py	97.95% <100.00%> (+1.59%)	:arrow_up:
capcruncher/cli/cli_alignments.py	100.00% <ø> (ø)
capcruncher/cli/cli_fastq.py	93.50% <100.00%> (ø)
capcruncher/cli/cli_interactions.py	92.72% <ø> (ø)
capcruncher/cli/fastq_deduplicate.py	100.00% <100.00%> (ø)
capcruncher/cli/fastq_digest.py	100.00% <100.00%> (ø)
... and 10 more

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