build(deps): Update pyranges requirement from <=0.0.127 to <=0.0.129

[dependabot[bot]]

Updates the requirements on pyranges to permit the latest version.

Changelog

Sourced from pyranges's changelog.

0.0.129 (29.06.2023)

• Fix join left category error #342 for real

0.0.128 (27.06.2023)

• Fix join left category error #342

0.0.127 (19.05.2023)

• Fix tostring regression

0.0.126 (17.05.2023)

• add preserve_order to join (@​aallahyar)

0.0.125 (09.05.2023)

• fix read_gtf error

0.0.124 (01.05.2023)

• make pyrle optional

0.0.123 (01.05.2023)

• fix gtf reading (@​fairliereese)
• fix FutureWarning split.py (@​y9c)
• add ignore_bad line to read_gtf to skip unparseable lines.

0.0.122 (01.05.2023) (@​marco-mariotti)

• genomicfeatures.genome_bounds can use a pyfaidx object as chromsizes
• add option genome_bounds to only clip right out-of-bounds
• genome_bounds bugfix: modified df in-place

0.0.121 (01.05.2023)

• update numpy types
• reformat with black
• fix doctests

0.0.120 (08.12.2022)

• fix error in null_types when a variable is pandas.StringDtype (@​mkanai)

0.0.119 (08.12.2022)

• Use pd.concat instead of deprecated df.append (@​aallahyar)
• Keep order of non-canonical columns when writing BED (@​fairliereese)

0.0.118 (08.12.2022)

@​marco-mariotti:

• bug fix on subsequence and spliced_subsequences, occurring when different groups of intervals overlapped, making the not contiguous in the sorted df
• expanded sort: now accepts "5" for sorting ascending on + stand, descending on - strand
• expanded gtf/gff readers
• expanded gtf/gff writer, now accepts a map_cols argument
• new method: boundaries to get boundaries of group of intervals
• expanded extend, now optionally accepts a group_by argument
• changed name of get_fasta to get_sequence
• new method: get_transcript_sequence

... (truncated)

Commits

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[codecov[bot]]

Codecov Report

Merging #247 (f5f10f4) into master (57ab934) will not change coverage. The diff coverage is n/a.

Additional details and impacted files

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