Run CapCruncher from an apptainer (singularity) container

sims-lab / CapCruncher

Analysis tool for NG-Capture-C, Tri-C and Tiled-C data

https://sims-lab.github.io/CapCruncher/

GNU General Public License v3.0

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Run CapCruncher from an apptainer (singularity) container #255

Open alsmith151 opened 9 months ago

alsmith151 commented 9 months ago

This command appears to work for now on the CCB Oxford cluster:

srun --cpus-per-task 20 singularity exec -B /ceph -B /databank -H $PWD:/home library://asmith151/capcruncher/capcruncher:latest capcruncher pipeline -c 20

This may speed up installs.

Caveat: SLURM based individual job submission will not work with this command.