sims-lab / CapCruncher

Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
https://sims-lab.github.io/CapCruncher/
GNU General Public License v3.0
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build(deps): Update snakemake requirement from <=7.32.4 to <=8.1.3 #261

Closed dependabot[bot] closed 8 months ago

dependabot[bot] commented 9 months ago

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v8.1.3

8.1.3 (2024-01-15)

Bug Fixes

  • bug with preemptible rules (#2616) (c6d7141)
  • do not pass snakefile as metadata when wms monitor flag is used (#2573) (13b3205)
  • use default group settings if not execution workflow (fixes attribute error occurring with --report) (#2617) (21e9964)
Changelog

Sourced from snakemake's changelog.

8.1.3 (2024-01-15)

Bug Fixes

  • bug with preemptible rules (#2616) (c6d7141)
  • do not pass snakefile as metadata when wms monitor flag is used (#2573) (13b3205)
  • use default group settings if not execution workflow (fixes attribute error occurring with --report) (#2617) (21e9964)

8.1.2 (2024-01-12)

Bug Fixes

  • local mtime handling in case of storage plugins and cleaner error message for parallel storage retrieval (#2611) (880b264)
  • Migrate away from deprecated pulp API (#2610) (fb26640)

8.1.1 (2024-01-11)

Bug Fixes

  • deduplicate input files before retrieval from storage (#2600) (37cf475)

8.1.0 (2024-01-08)

Features

Bug Fixes

  • add mamba to docker image (eb0c884)
  • correctly report lineno (#2584) (967a0d7)
  • move apptainer into separate env in docker image (94e9e2c)
  • single line f-string format error in py3.12 (#2588) (87c06c0)

Documentation

8.0.1 (2023-12-21)

Bug Fixes

... (truncated)

Commits
  • daa6d9f chore(main): release 8.1.3 (#2618)
  • 13b3205 fix: do not pass snakefile as metadata when wms monitor flag is used (#2573)
  • 21e9964 fix: use default group settings if not execution workflow (fixes attribute er...
  • c6d7141 fix: bug with preemptible rules (#2616)
  • 4195955 chore(main): release 8.1.2 (#2612)
  • fb26640 fix: Migrate away from deprecated pulp API (#2610)
  • 880b264 fix: local mtime handling in case of storage plugins and cleaner error messag...
  • 34f3e31 Remove AUTHORS.rst, a zero-byte file (#2605)
  • 551cba1 chore(main): release 8.1.1 (#2603)
  • 37cf475 fix: deduplicate input files before retrieval from storage (#2600)
  • Additional commits viewable in compare view


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codecov[bot] commented 9 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (644995a) 68.28% compared to head (1180280) 68.73%. Report is 1 commits behind head on master.

:exclamation: Current head 1180280 differs from pull request most recent head 540ef99. Consider uploading reports for the commit 540ef99 to get more accurate results

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dependabot[bot] commented 8 months ago

Superseded by #268.