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sims-lab / CapCruncher

Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
https://sims-lab.github.io/CapCruncher/
GNU General Public License v3.0
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build(deps): Update snakemake requirement from <=7.32.4 to <=8.4.2 #268

Closed dependabot[bot] closed 7 months ago

dependabot[bot] commented 8 months ago

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v8.4.2

8.4.2 (2024-01-30)

Bug Fixes

  • allow lookup dpath or query to be a callable (33f1637)
  • fix error when passing callable as dpath or query of lookup function (0e5b878)
Changelog

Sourced from snakemake's changelog.

8.4.2 (2024-01-30)

Bug Fixes

  • allow lookup dpath or query to be a callable (33f1637)
  • fix error when passing callable as dpath or query of lookup function (0e5b878)

8.4.1 (2024-01-30)

Fixes

  • fixed resource handling in profiles

8.4.0 (2024-01-29)

Features

  • add cols argument to lookup function; fix various minor bugs on cluster systems (#2651) (ca7a602)

Bug Fixes

8.3.2 (2024-01-25)

Bug Fixes

  • do not require cores to be set for non-executing modes (#2646) (30cf026)

8.3.1 (2024-01-23)

Documentation

8.3.0 (2024-01-23)

Features

  • implement semantic helper functions for input and param function handling (#2344) (b4b5e51)

... (truncated)

Commits


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dependabot[bot] commented 8 months ago

A newer version of snakemake exists, but since this PR has been edited by someone other than Dependabot I haven't updated it. You'll get a PR for the updated version as normal once this PR is merged.

codecov[bot] commented 8 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (25e7b04) 68.24% compared to head (ecf52f8) 68.24%.

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/268/graphs/tree.svg?width=650&height=150&src=pr&token=RHIGNMGX09&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab)](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/268?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab) ```diff @@ Coverage Diff @@ ## master #268 +/- ## ======================================= Coverage 68.24% 68.24% ======================================= Files 37 37 Lines 3152 3152 ======================================= Hits 2151 2151 Misses 1001 1001 ``` ------ [Continue to review full report in Codecov by Sentry](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/268?src=pr&el=continue&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab). > **Legend** - [Click here to learn more](https://docs.codecov.io/docs/codecov-delta?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab) > `Δ = absolute (impact)`, `ø = not affected`, `? = missing data` > Powered by [Codecov](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/268?src=pr&el=footer&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab). Last update [25e7b04...ecf52f8](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/268?src=pr&el=lastupdated&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab). Read the [comment docs](https://docs.codecov.io/docs/pull-request-comments?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab).
alsmith151 commented 8 months ago

@dependabot rebase

dependabot[bot] commented 8 months ago

Looks like this PR has been edited by someone other than Dependabot. That means Dependabot can't rebase it - sorry!

If you're happy for Dependabot to recreate it from scratch, overwriting any edits, you can request @dependabot recreate.

alsmith151 commented 7 months ago

@dependabot rebase

dependabot[bot] commented 7 months ago

Looks like this PR has been edited by someone other than Dependabot. That means Dependabot can't rebase it - sorry!

If you're happy for Dependabot to recreate it from scratch, overwriting any edits, you can request @dependabot recreate.

alsmith151 commented 7 months ago

@dependabot recreate

dependabot[bot] commented 7 months ago

Superseded by #279.