sims-lab / CapCruncher

Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
https://sims-lab.github.io/CapCruncher/
GNU General Public License v3.0
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build(deps): Update snakemake requirement from <=7.32.4 to <=8.14.0 #291

Closed dependabot[bot] closed 2 months ago

dependabot[bot] commented 3 months ago

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v8.14.0

8.14.0 (2024-06-11)

Features

  • add flag to mark files where path should not be modified (#2888) (d142b46)
  • support per rule shell exec setting via resources (#2862) (ab8d2dd)

Documentation

  • update FAQ - recommend ensure function for failing on empty output (#2910) (b035071)
Changelog

Sourced from snakemake's changelog.

8.14.0 (2024-06-11)

Features

  • add flag to mark files where path should not be modified (#2888) (d142b46)
  • support per rule shell exec setting via resources (#2862) (ab8d2dd)

Documentation

  • update FAQ - recommend ensure function for failing on empty output (#2910) (b035071)

8.13.0 (2024-06-05)

Features

  • support for default value specification when using lookup helper function (#2907) (08e88e2)

Documentation

8.12.0 (2024-05-27)

Features

  • Include parameters in extended benchmarks (#2887) (31a9c9b)

Bug Fixes

  • fix corner case bug in input function exception handling (#2895) (fc24292)
  • fix quoting issues when passing complex apptainer args to spawned jobs (#2898) (b07e2e0)
  • properly restrict scheduler if --jobs/-j is used (in contrast to --cores) in local execution (#2897) (6a276bb)
  • typo in workflow specific profile default location (#2878) (74627d3)

8.11.6 (2024-05-17)

Bug Fixes

  • fix opening of multiple checkout output files in the same input function when using remote storage (2f8e719)

8.11.5 (2024-05-16)

... (truncated)

Commits
  • f49d299 chore(main): release 8.14.0 (#2909)
  • ab8d2dd feat: support per rule shell exec setting via resources (#2862)
  • b035071 docs: update FAQ - recommend ensure function for failing on empty output (#2910)
  • d142b46 feat: add flag to mark files where path should not be modified (#2888)
  • 6f3669d chore(main): release 8.13.0 (#2906)
  • 08e88e2 feat: support for default value specification when using lookup helper functi...
  • 3f01348 docs: add badge for bioconda version (#2902)
  • 0fe0459 chore(main): release 8.12.0 (#2890)
  • fc24292 fix: fix corner case bug in input function exception handling (#2895)
  • b07e2e0 fix: fix quoting issues when passing complex apptainer args to spawned jobs (...
  • Additional commits viewable in compare view


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codecov[bot] commented 3 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 68.29%. Comparing base (bfbef27) to head (1c3826d).

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/291/graphs/tree.svg?width=650&height=150&src=pr&token=RHIGNMGX09&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab)](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/291?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab) ```diff @@ Coverage Diff @@ ## master #291 +/- ## ========================================== - Coverage 68.73% 68.29% -0.44% ========================================== Files 37 37 Lines 3205 3205 ========================================== - Hits 2203 2189 -14 - Misses 1002 1016 +14 ``` [see 1 file with indirect coverage changes](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/291/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab) ------ [Continue to review full report in Codecov by Sentry](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/291?dropdown=coverage&src=pr&el=continue&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab). > **Legend** - [Click here to learn more](https://docs.codecov.io/docs/codecov-delta?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab) > `Δ = absolute (impact)`, `ø = not affected`, `? = missing data` > Powered by [Codecov](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/291?dropdown=coverage&src=pr&el=footer&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab). Last update [bfbef27...1c3826d](https://app.codecov.io/gh/sims-lab/CapCruncher/pull/291?dropdown=coverage&src=pr&el=lastupdated&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab). Read the [comment docs](https://docs.codecov.io/docs/pull-request-comments?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sims-lab).
dependabot[bot] commented 2 months ago

Superseded by #295.