search

sims-lab / CapCruncher

Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
https://sims-lab.github.io/CapCruncher/
GNU General Public License v3.0
6 stars 3 forks source link

build(deps): Update snakemake requirement from <=7.32.4 to <=8.19.0 #298

Open dependabot[bot] opened 1 month ago

dependabot[bot] commented 1 month ago

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v8.19.0

8.19.0 (2024-08-29)

Features

  • check consistency of output file mtimes (must be newer than input files) (#3050) (666cf62)
  • print host name when executing workflow (#3048) (b0ff787)

Bug Fixes

  • mem and disk inference fixes (#3040) (7530794)
  • avoid error accessing superclass in ioutils (#3056) (a66a5f5)
  • disable execute after print compilation (#3041) (86ed3cd)
  • download report assets upon package build such that reports become possible offline (cont. of #2904) (#3026) (e8dad4b)

Documentation

Changelog

Sourced from snakemake's changelog.

8.19.0 (2024-08-29)

Features

  • check consistency of output file mtimes (must be newer than input files) (#3050) (666cf62)
  • print host name when executing workflow (#3048) (b0ff787)

Bug Fixes

  • mem and disk inference fixes (#3040) (7530794)
  • avoid error accessing superclass in ioutils (#3056) (a66a5f5)
  • disable execute after print compilation (#3041) (86ed3cd)
  • download report assets upon package build such that reports become possible offline (cont. of #2904) (#3026) (e8dad4b)

Documentation

8.18.2 (2024-08-21)

Documentation

  • recommending raw strings to get rid of syntax warnings (#3022) (877b3a3)
  • tutorial polishing (16b1657)

8.18.1 (2024-08-19)

Bug Fixes

  • add assets and use local file links to allow offline reports (#2904) (9cd94f7)
  • use query from storage object in order to be able to reflect possible modifications (via StorageProvider.postprocess_query()) (#3031) (3ddae58)

Documentation

  • clarify config file location (6bd67d7)

8.18.0 (2024-08-14)

Features

... (truncated)

Commits
  • f955478 chore(main): release 8.19.0 (#3051)
  • a66a5f5 fix: avoid error accessing superclass in ioutils (#3056)
  • 86ed3cd fix: disable execute after print compilation (#3041)
  • e8dad4b fix: download report assets upon package build such that reports become possi...
  • b11460c docs: various documentation fixes (#3052)
  • 666cf62 feat: check consistency of output file mtimes (must be newer than input files...
  • de201fb docs: Fix typo (seesee to see) (#3037)
  • 9a4006d docs: Add 'Editor integrations' section to Installation page (#3045)
  • 7530794 fix: mem and disk inference fixes (#3040)
  • b0ff787 feat: print host name when executing workflow (#3048)
  • Additional commits viewable in compare view


Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)