Conda activate resulting in PATH Errors and can't find mamba

sims-lab / ccb-wiki

Wiki documenting the CBRG cluster setup

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Closed Charlie-George closed 3 years ago

Charlie-George commented 3 years ago

Conda is behaving strangely on CCB server because of conda install at /usr/condabin

after sourcing conda correctly, activating a new environment alters the path to no longer pick up correct conda or mamba from base env when in a different environment.

this is likely related to [https://github.com/conda/conda/issues/9392] and multiple conda installs - particuarly /usr/condabin is added to path and conda recognises this before your proper condainstall

Charlie-George commented 3 years ago

Fix - add this line to .bashrc before sourcing conda

PATH=$(echo "$PATH" | sed -e 's/\/usr\/condabin://')

It removed /usr/condabin from path