TDJorgensen
commented
5 years ago I'm not sure what the issue is on your machine, but I just ran your example on my machine without any error. I have the same versions you do, except my R is version 3.5.2 and on Windows (but I doubt that is the problem).
other attached packages:
[1] mice_3.3.0 lattice_0.20-38 semTools_0.5-1.908 lavaan_0.6-3 jtools_1.1.1
[6] emmeans_1.3.1 It is possible I forgot to iterate the version number when I fixed this bug before. Can you try installing the development version of semTools again?
kstyck
fitMeasures() returns an error (similar to the bug reported for fitMeasures() with lavaan.mi() earlier) when cfi.mi() is used with data that is a list of imputed datasets obtained from the mice package (even when the development version is installed). Thanks in advance for your help! :-)
Example from the help page of runMI
HSMiss <- HolzingerSwineford1939[ , c(paste("x", 1:9, sep = ""), "ageyr","agemo","school")] set.seed(12345) HSMiss$x5 <- ifelse(HSMiss$x5 <= quantile(HSMiss$x5, .3), NA, HSMiss$x5) age <- HSMiss$ageyr + HSMiss$agemo/12 HSMiss$x9 <- ifelse(age <= quantile(age, .3), NA, HSMiss$x9) HS.model <- ' visual =~ x1 + x2 + x3 textual =~ x4 + x5 + x6 speed =~ x7 + x8 + x9 ' set.seed(12345) HS.mice <- mice(HSMiss, m=3) HS.mice.list <- complete(data=HS.mice, action=c(1:3), mild=T) out <- cfa.mi(HS.model, data=HS.mice.list) summary(out) fitMeasures(out) Error in gp.resid.lavaan.mi(Observed = object@SampleStatsList[useImps], : object 'N' not found
sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS High Sierra 10.13.6
Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] polycor_0.7-9 psych_1.8.10 plyr_1.8.4 semTools_0.5-1.908 mice_3.3.0 lattice_0.20-35
[7] lavaan_0.6-3
loaded via a namespace (and not attached): [1] tidyselect_0.2.4 remotes_2.0.2 purrr_0.2.5 splines_3.5.1 usethis_1.4.0 stats4_3.5.1 pan_1.6
[8] survival_2.42-3 rlang_0.2.2 pkgbuild_1.0.2 jomo_2.6-5 nloptr_1.2.1 pillar_1.3.0 foreign_0.8-70
[15] glue_1.3.0 withr_2.1.2 sessioninfo_1.1.1 bindrcpp_0.2.2 bindr_0.1.1 devtools_2.0.1 memoise_1.1.0
[22] callr_3.1.1 ps_1.3.0 curl_3.3 parallel_3.5.1 broom_0.5.0 Rcpp_0.12.18 backports_1.1.2
[29] desc_1.2.0 pkgload_1.0.2 fs_1.2.6 lme4_1.1-18-1 mnormt_1.5-5 digest_0.6.16 processx_3.2.1
[36] dplyr_0.7.6 rprojroot_1.3-2 grid_3.5.1 cli_1.0.0 tools_3.5.1 magrittr_1.5 tibble_1.4.2
[43] crayon_1.3.4 tidyr_0.8.1 pbivnorm_0.6.0 pkgconfig_2.0.2 MASS_7.3-50 Matrix_1.2-14 prettyunits_1.0.2 [50] assertthat_0.2.0 minqa_1.2.4 mitml_0.3-7 R6_2.2.2 rpart_4.1-13 nnet_7.3-12 nlme_3.1-137
[57] compiler_3.5.1