As a developer, I want a Vivarium alternator process to switch from a fiber scale simulation in MEDYAN or Cytosim to a monomer scale simulation in ReaDDy in a subvolume when a given condition is met.
Acceptance Criteria
A Vivarium simulation of fibers in MEDYAN/Cytosim automatically switches to monomers in ReaDDy once a given test condition is met.
Details
Need to create an alternator process (or similar) in Vivarium with a test condition. This process will also choose the subvolume bounds.
Details of test condition still TBD, could be highly bent fibers, twisted fibers, fibers in a tightly constrained space
Use Case
As a developer, I want a Vivarium alternator process to switch from a fiber scale simulation in MEDYAN or Cytosim to a monomer scale simulation in ReaDDy in a subvolume when a given condition is met.
Acceptance Criteria
A Vivarium simulation of fibers in MEDYAN/Cytosim automatically switches to monomers in ReaDDy once a given test condition is met.
Details
Need to create an alternator process (or similar) in Vivarium with a test condition. This process will also choose the subvolume bounds.
Details of test condition still TBD, could be highly bent fibers, twisted fibers, fibers in a tightly constrained space