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simularium / simularium-planning

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Prepare data for ReaDDy malaria example #76

Closed blairlyons closed 5 months ago

blairlyons commented 2 years ago

Use Case

As a user, I want to be able to explore an example ReaDDy model on the viewer website.

Acceptance Criteria

A simularium file with a trajectory from https://www.biorxiv.org/content/10.1101/2021.10.04.462981v1

Details

code: https://github.com/usschwarz/networks

blairlyons commented 1 year ago

waiting to hear back from authors if it's possible to get the ReaDDy .h5 files so we don't have to calculate them again

blairlyons commented 1 year ago

waiting for author feedback

blairlyons commented 5 months ago

didn't hear back from the authors so this is the final version for now