sinanshi ge issues - Githubissues

sinanshi / ge

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shapeit4_full_allsnp (28792) missing one sample

#16 sinanshi opened 5 years ago
1
The switch error results differ in two dataset.

#15 sinanshi opened 5 years ago
2
Phasing - should divide the chunk by Mb instead of number of sites.

#14 sinanshi opened 5 years ago
0
Why so many flips?

#13 sinanshi opened 5 years ago
0
SHAPEIT2 worse accuracy than SHAPEIT4?

#12 sinanshi opened 5 years ago
0
flip switch rate above 50%?

#11 sinanshi closed 5 years ago
1
liftover 10292 b37 samples

#10 sinanshi opened 5 years ago
0
Diary

#9 sinanshi opened 5 years ago
1
multi-allelic using bcftools norm

#8 sinanshi opened 5 years ago
0
full vanilla shapeit4 re-test

#7 sinanshi opened 5 years ago
1
High mendelean error

#6 sinanshi opened 5 years ago
3
GEL sequencing data SHAPEIT4 testing

#5 sinanshi opened 5 years ago
1
singleton

#4 sinanshi opened 5 years ago
1
Flip rate

#3 sinanshi closed 5 years ago
1
Merge all samples to a single file - chr22

#2 sinanshi closed 5 years ago
3
VCF subsetting results empty.

#1 sinanshi closed 6 years ago
0