bicycle align does not work with gzipped fastq files

sing-group / bicycle

bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis

http://www.sing-group.org/bicycle

GNU Lesser General Public License v3.0

8 stars 1 forks source link

bicycle align does not work with gzipped fastq files #2

Open cschu opened 6 years ago

cschu commented 6 years ago

Potentially reference-bisulfitation will have the same problem, but with gzipped fastas?

lipido commented 6 years ago

Thank you for the suggestion. Your are right: bicycle align does not support gzipped fastq files, but it is an interesting option to consider.