singa-bio / singa

:leaves: SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.
MIT License
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consider composing enzymes from subunits. #12

Closed cleberecht closed 6 years ago

cleberecht commented 7 years ago

Subunits should be needed to calculate diffusion speed. Lots of proteins are naturally occurring as dimers or similar. This should be parsed and used to calculate something as effective weight.

cleberecht commented 6 years ago

Implemented complex building reactions that enable this. Further Complexed Chemical Entities can be used to statically combine entities to complex entities. Considered as resolved as of ee70cbf.