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singa-bio / singa

:leaves: SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.
MIT License
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consider subcellular location for placement of enzymes #14

Closed cleberecht closed 6 years ago

cleberecht commented 7 years ago

Uniprot has also data for the subcellular location of enzymes. This can later be used to place enzymes automatically in certain parts of the cell.

cleberecht commented 6 years ago

Since 3a9bc7e the UniprotParser is able to parse subcellular location as annotation for proteins. Using an ontology it would be possible to place proteins automatically, at the current time this i out of reach.