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singa-bio / singa

:leaves: SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.
MIT License
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add possibility to import reactions from sbml files #2

Closed cleberecht closed 7 years ago

cleberecht commented 8 years ago

Previously we imported new reactions from the Sabio-RK database using our own Parser to parse a subset of usable reactions.

Since a major rewrite of the reaction api this parser is basically broken. I propose we have a look at LibSBML to parse reactions from sbml files.

cleberecht commented 7 years ago

started this in the new dynamic reactions branch (see commit 2142c2f)

cleberecht commented 7 years ago

finishend fundamental implementations in 9aa669e