implement parallel distance matrix calculation

singa-bio / singa

:leaves: SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

MIT License

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implement parallel distance matrix calculation #27

Closed fkaiserbio closed 5 years ago

fkaiserbio commented 7 years ago

we can define a divide-and-conquer calculation for the computation of large distance matrices
this should be abstracted on the level of Metric interface

cleberecht commented 5 years ago

@fkaiserbio Do we still need this? Seems like current calculations are "fast enough".

fkaiserbio commented 5 years ago

agree on that, would probably cause more overhead than speed-up