retrieval of prototype amino acid structures failes

singa-bio / singa

:leaves: SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

MIT License

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retrieval of prototype amino acid structures failes #67

Closed fkaiserbio closed 7 years ago

fkaiserbio commented 7 years ago

if the built artifact is used loading of template PDB files for prototype amino acids fails with NoSuchFileException
solution: allow the usage of streams for structure parsing so that the resource can be loaded from within the packaged artifact
try: AminoAcidFamily.GLYCINE.getPrototype();

cleberecht commented 7 years ago

implementation of input stream parsing fixes this