[r] Seurat <> SOMA interop future work - Githubissues

single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

https://tiledbsoma.readthedocs.io

MIT License

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[r] Seurat <> SOMA interop future work #1192

Open mojaveazure opened 1 year ago

mojaveazure commented 1 year ago

Inital Seurat <> SOMA interop added in #1119 (#941) and #1146 (#942). This issue is tracking additional goals desired for Seurat <> SOMA interop

SOMA → Seurat goals:

[ ] allow SOMAExperiment → Seurat conversion instead of SOMAExperiment → query → Seurat #1261
[ ] allow appending data from SOMA to existing Seurat object
[ ] support for multimodal loading #1261
[ ] support for extended assays (eg. SCTAssay, ChromatinAssay)
[ ] support for spatially-resolved datasets

Seurat → SOMA goals:

[ ] allow ingesting of extended assays (eg. SCTAssay, ChromatinAssay)
[ ] allow ingesting of spatially resolved datasets

johnkerl commented 1 year ago

❤️ thanks @mojaveazure !! :)