[python] Use new C++ API bindings in Python API (parent task)

single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

https://tiledbsoma.readthedocs.io

MIT License

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[python] Use new C++ API bindings in Python API (parent task) #1632

Closed nguyenv closed 6 days ago

nguyenv commented 1 year ago

Split-off from https://github.com/single-cell-data/TileDB-SOMA/issues/1240

[x] #1714
Pybind11 bindings
- [x] #1715
- [x] #2077
- [x] #2078
- [x] #2674
[x] #2228
[x] #2240
[x] #2241

johnkerl commented 8 months ago

I think the @eddelbuettel assign was spurious -- unassigning -- @eddelbuettel if you're truly doing Python work, please let me know.

johnkerl commented 3 months ago

All that remains on the Python side is the final deprecation (with phase-out in TileDB-SOMA 1.14) wherein users will need to pass tiledb config via hashmap only, no longer via tiledb.Ctx.

So this is blocked until TileDB-SOMA 1.14.

johnkerl commented 6 days ago

https://github.com/single-cell-data/TileDB-SOMA/pull/2752