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single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
MIT License
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[spatial] Add tutorial notebook #2705

Closed ryan-williams closed 1 month ago

ryan-williams commented 1 month ago

Issue and/or context: #2657

Changes: Add example notebook showing basic spatial SOMA ingestion and use

Demo: https://tiledbsoma.readthedocs.io/en/rw-spnb/notebooks/tutorial_spatial.html

Notes for Reviewers:

image

codecov[bot] commented 1 month ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 87.17%. Comparing base (a2622b6) to head (f89718c).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## spatial #2705 +/- ## ======================================== Coverage 87.17% 87.17% ======================================== Files 41 41 Lines 4296 4296 ======================================== Hits 3745 3745 Misses 551 551 ``` | [Flag](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2705/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2705/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `87.17% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data#carryforward-flags-in-the-pull-request-comment) to find out more. | [Components](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2705/components?src=pr&el=components&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python_api](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2705/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `87.17% <ø> (ø)` | | | [libtiledbsoma](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2705/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `∅ <ø> (∅)` | |