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single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
MIT License
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[spatial] Add presence matrices to experimental ingestor #2729

Closed jp-dark closed 3 weeks ago

jp-dark commented 4 weeks ago

Add obs_scene and var_scene creation to the experimental Visium ingestor.

codecov[bot] commented 4 weeks ago

Codecov Report

Attention: Patch coverage is 0% with 43 lines in your changes missing coverage. Please review.

Project coverage is 86.33%. Comparing base (69d699e) to head (8ddf1df).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## spatial #2729 +/- ## =========================================== - Coverage 87.09% 86.33% -0.77% =========================================== Files 41 41 Lines 4302 4340 +38 =========================================== Hits 3747 3747 - Misses 555 593 +38 ``` | [Flag](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2729/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2729/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `86.33% <0.00%> (-0.77%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data#carryforward-flags-in-the-pull-request-comment) to find out more. | [Components](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2729/components?src=pr&el=components&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python_api](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2729/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `86.33% <0.00%> (-0.77%)` | :arrow_down: | | [libtiledbsoma](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2729/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `∅ <ø> (∅)` | |