single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
MIT License
79 stars 21 forks source link

[python] Replace `TileDBObject` with `SOMAObject`; Remove `tiledb.TileDBError` usage 4/5 #2736

Closed nguyenv closed 3 weeks ago

nguyenv commented 3 weeks ago

Issue and/or context:

This is on top of https://github.com/single-cell-data/TileDB-SOMA/pull/2735

Changes:

codecov[bot] commented 3 weeks ago

Codecov Report

Attention: Patch coverage is 96.77419% with 1 line in your changes missing coverage. Please review.

Project coverage is 89.84%. Comparing base (105cfe5) to head (e944c0b).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #2736 +/- ## ========================================== + Coverage 89.32% 89.84% +0.52% ========================================== Files 37 37 Lines 4037 3980 -57 ========================================== - Hits 3606 3576 -30 + Misses 431 404 -27 ``` | [Flag](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2736/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2736/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `89.84% <96.77%> (+0.52%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data#carryforward-flags-in-the-pull-request-comment) to find out more. | [Components](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2736/components?src=pr&el=components&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python_api](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2736/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `89.84% <96.77%> (+0.52%)` | :arrow_up: | | [libtiledbsoma](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2736/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `∅ <ø> (∅)` | |