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single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
MIT License
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[python] Work around pyarrow>=13 issue on MacOS, `release-1.12` branch #2739

Closed johnkerl closed 3 weeks ago

johnkerl commented 3 weeks ago

Issue and/or context: Apply #2734 to release-1.12 for #2692, hoping to isolate the segfault from #2734.

codecov[bot] commented 3 weeks ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 90.03%. Comparing base (f8a2c9d) to head (ced152f).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## release-1.12 #2739 +/- ## ============================================= Coverage 90.03% 90.03% ============================================= Files 37 37 Lines 4016 4016 ============================================= Hits 3616 3616 Misses 400 400 ``` | [Flag](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2739/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2739/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `90.03% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data#carryforward-flags-in-the-pull-request-comment) to find out more. | [Components](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2739/components?src=pr&el=components&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python_api](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2739/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `90.03% <ø> (ø)` | | | [libtiledbsoma](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2739/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `∅ <ø> (∅)` | |
johnkerl commented 3 weeks ago

Segfaults like main on #2734 ✅ . This was just an experiment.