[python] [NO MERGE UNTIL 1.14] Remove tiledb-py dependency - Githubissues

single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

MIT License

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[python] [NO MERGE UNTIL 1.14] Remove tiledb-py dependency #2752

Open nguyenv opened 3 weeks ago

nguyenv commented 3 weeks ago

Issue and/or context:

https://github.com/single-cell-data/TileDB-SOMA/issues/1632

This completes the SOMA Python API move over from tiledb-py to C++. We need to wait for 1.14 due to https://github.com/single-cell-data/TileDB-SOMA/pull/2693 and https://github.com/single-cell-data/TileDB-SOMA/pull/2720.

Changes:

Remove tiledb.ctx usage
Remove tiledb.Filter usage
Remove tiledb.VFS usage
Modify unit tests so that tests or lines that use tiledb-py get skipped if it not installed