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single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
https://tiledbsoma.readthedocs.io
MIT License
90 stars 25 forks source link

[c++] Parameterize schema-creation unit-test helpers #2939

Closed johnkerl closed 1 month ago

johnkerl commented 1 month ago

Issue and/or context: This is a line-count-reducing under-diff following on #2936 for issue #2407 / [sc-51048].

The intended Python and R API changes are all agreed on and finalized as described in #2407.

Changes:

Some prep for having variant-indexed dataframe objects in libtiledbsoma test so that #2916 and #2917 can be unit-tested.

This will get put to work for other datatypes on #2916 and #2917.

Notes for Reviewer:

2785 is unreviewable as-is: besides being a WIP, it's an all-in-one experimental area. Smaller PRs such as this one are being offered for manageable review.

codecov[bot] commented 1 month ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 90.02%. Comparing base (c8d6ca2) to head (f577de6). Report is 1 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #2939 +/- ## ========================================== + Coverage 89.87% 90.02% +0.15% ========================================== Files 38 38 Lines 3999 3999 ========================================== + Hits 3594 3600 +6 + Misses 405 399 -6 ``` | [Flag](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2939/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2939/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `90.02% <ø> (+0.15%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data#carryforward-flags-in-the-pull-request-comment) to find out more. | [Components](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2939/components?src=pr&el=components&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python_api](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2939/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `90.02% <ø> (+0.15%)` | :arrow_up: | | [libtiledbsoma](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/2939/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `∅ <ø> (∅)` | |
johnkerl commented 1 month ago

Leaving this in draft until I address unit-test failures