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single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
https://tiledbsoma.readthedocs.io
MIT License
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[python] Fix deprecation warnings [`release-1.14`] #3013

Closed johnkerl closed 1 month ago

johnkerl commented 1 month ago

Issue and/or context: #2998 was (it turns out) incomplete and did not fail until after 1.14.0 was tagged. :(

Fixes https://github.com/single-cell-data/TileDB-SOMA/actions/runs/10912549693/job/30287424101#step:13:6876

See also #2999 [sc-53002]

codecov[bot] commented 1 month ago

Codecov Report

Attention: Patch coverage is 20.00000% with 4 lines in your changes missing coverage. Please review.

Project coverage is 89.79%. Comparing base (7323987) to head (9335541). Report is 1 commits behind head on release-1.14.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## release-1.14 #3013 +/- ## ================================================ + Coverage 89.64% 89.79% +0.14% ================================================ Files 40 40 Lines 4096 4096 ================================================ + Hits 3672 3678 +6 + Misses 424 418 -6 ``` | [Flag](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3013/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3013/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `89.79% <20.00%> (+0.14%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data#carryforward-flags-in-the-pull-request-comment) to find out more. | [Components](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3013/components?src=pr&el=components&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python_api](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3013/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `89.79% <20.00%> (+0.14%)` | :arrow_up: | | [libtiledbsoma](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3013/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `∅ <ø> (∅)` | |