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single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
https://tiledbsoma.readthedocs.io
MIT License
90 stars 25 forks source link

[python] Update names/methods to match somacore #3022

Closed jp-dark closed 3 weeks ago

jp-dark commented 4 weeks ago
codecov[bot] commented 4 weeks ago

Codecov Report

Attention: Patch coverage is 74.35897% with 10 lines in your changes missing coverage. Please review.

Project coverage is 77.89%. Comparing base (fb6b6f6) to head (65b14e6). Report is 1 commits behind head on spatial.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## spatial #3022 +/- ## ============================================ + Coverage 58.35% 77.89% +19.53% ============================================ Files 112 49 -63 Lines 13571 5035 -8536 Branches 801 0 -801 ============================================ - Hits 7920 3922 -3998 + Misses 5449 1113 -4336 + Partials 202 0 -202 ``` | [Flag](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3022/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [libtiledbsoma](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3022/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `?` | | | [python](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3022/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `77.89% <74.35%> (+0.16%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data#carryforward-flags-in-the-pull-request-comment) to find out more. | [Components](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3022/components?src=pr&el=components&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | Coverage Δ | | |---|---|---| | [python_api](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3022/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `77.89% <74.35%> (+0.16%)` | :arrow_up: | | [libtiledbsoma](https://app.codecov.io/gh/single-cell-data/TileDB-SOMA/pull/3022/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=single-cell-data) | `∅ <ø> (∅)` | |