RDR preprocessing filtering out all genes

single-cell-genetics / XClone

Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

https://xclone-cnv.readthedocs.io/en/latest/

Apache License 2.0

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RDR preprocessing filtering out all genes #9

Closed cnk113 closed 3 weeks ago

cnk113 commented 1 year ago

Hello,

I'm running into an issue with run_RDR where it filters out all genes. It looks like the minimum gene of 3000 is not being enforced?

Thanks, Chang

Rongtingting commented 1 year ago

Hi Chang,

Thank your for your feedback. Could you try the latest version? need install from GitHub.pip install git+https://github.com/single-cell-genetics/XClone

Rongtingting commented 3 weeks ago

Welcome to reopen this if you still have questions on this.