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single-cell-genetics / cellSNP

Pileup biallelic SNPs from single-cell and bulk RNA-seq data
Apache License 2.0
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Reference Genome #15

Open OldManTae opened 3 years ago

OldManTae commented 3 years ago

Hello,

Does cellSNP take in a reference genome?

Best,

Tae

huangyh09 commented 3 years ago

Thanks Tae. No, cellSNP doesn't take reference genome, but use the REF in VCF file as reference.

Yuanhua