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single-cell-genetics / cellsnp-lite

Efficient genotyping bi-allelic SNPs on single cells
https://cellsnp-lite.readthedocs.io
Apache License 2.0
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Not clear what the flag -p does #27

Closed maxozo closed 2 years ago

maxozo commented 2 years ago

Hi, could you please explain a bit more on what the flag -p does. Is it number of threads? If so For long processes, should I set it to available cores, or does it take the available max as default?

Thanks

hxj5 commented 2 years ago

Hi, -p is the number of threads and its default value is 1 (single thread). You have to manually specify it if you would like to use all available cores (threads).

maxozo commented 2 years ago

Awesome, thanks.