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single-cell-genetics / cellsnp-lite

Efficient genotyping bi-allelic SNPs on single cells
https://cellsnp-lite.readthedocs.io
Apache License 2.0
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Handle SMART-Seq bams? #31

Closed teng-gao closed 2 years ago

teng-gao commented 2 years ago

Edit: usage for SMART-Seq is in the usage manual

Hi,

What's the best way to use cellsnp-lite for SMART-Seq input, where each cell has its own BAM?

Thanks, Teng