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single-cell-genetics / cellsnp-lite

Efficient genotyping bi-allelic SNPs on single cells
https://cellsnp-lite.readthedocs.io
Apache License 2.0
124 stars 11 forks source link

Unable to install CellSNP-Lite from conda #74

Closed aseyedia closed 1 year ago

aseyedia commented 1 year ago

Hello,

I would like to install this package for use with NumBat, but unfortunately, I am having trouble doing so:

(base) [seyediana@reslnvvhpc041 ~]$ conda config --add channels bioconda
Warning: 'bioconda' already in 'channels' list, moving to the top
(base) [seyediana@reslnvvhpc041 ~]$ conda config --add channels conda-forge
Warning: 'conda-forge' already in 'channels' list, moving to the top
...
(base) [seyediana@c-3-13 ~]$ conda install cellsnp-lite
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: \

Conda has been solving environments for about 30 minutes now. I may try to install from source but please let me know if the error is on my end at all.

Thank you, Arta

aseyedia commented 1 year ago

Never mind, I just realized that NumBat has a Docker container, so I no longer need to install its dependencies.